| Situs 2.8 release information
To accompany our new paper on map and model assessment (Wriggers and He, 2015), you can download a modified version of Situs that describes how the data in Figure 3 was computed.
The complete release of Situs 2.8 is in progress and will be released shortly. If you are
interested in helping us test the software installation, please write us at situs
>>at<< biomachina.org to get an advance copy.
Situs now an SBGrid supported
2012 describes many of the Situs conventions (such as
correlation, resolution, map formats) and scripting enabled work flows.
2.7 introduced the voltrac utility for detecting filamentous
densities (such as alpha-helices and actin
and Wriggers, 2012, Rusu
et al., 2012). We also included the new volfltr
utility for denoising 3D maps and 2D image stacks (Starosolski
et al., 2012) using a digital paths
program package for the modeling of atomic resolution structures into
density maps e.g. from electron
microscopy, tomography, or small angle