- Original article (Situs 1.0):
Willy Wriggers, Ronald A. Milligan, and J. Andrew
McCammon. Situs: A Package for Docking Crystal Structures into
Low-Resolution Maps from Electron Microscopy. J. Structural Biology,
1999, Vol. 125, pp. 185-195. [Abstract]
[JSB
Cover] [Article]
[JSB
Paper of the Year Award]
- Vector quantization method:
Willy Wriggers, Ronald A. Milligan, Klaus Schulten,
and J. Andrew McCammon. Self-Organizing Neural Networks Bridge the
Biomolecular Resolution Gap. J. Molecular Biology, 1998, Vol.
284, pp. 1247-1254.
[Abstract] [Article]
- Situs 2.0, correlation-based docking:
Pablo Chacón and Willy Wriggers.
Multi-Resolution Contour-Based Fitting of Macromolecular Structures.
J. Mol. Biol., 2002, Vol 317, pp. 375-384.
[Abstract]
[JMB Cover] [Article]
[Structure Paper Alert]
- Application to SAXS:
Willy Wriggers and Pablo Chacón. Using
Situs for the Registration of Protein Structures with Low-Resolution
Bead Models from
X-ray Solution Scattering. J. Appl. Cryst., 2001, Vol. 34,
pp. 773-776. [Abstract]
[Article]
[Link]
- Map editing, discrepancy mapping, docking algorithms:
Willy Wriggers and Pablo Chacón.
Modeling Tricks and Fitting Techniques for Multi-Resolution Structures.
Structure,
2001, Vol. 9, pp. 779-788. [1st
Paragraph] [Article]
- Flexible fitting (application and theory):
Natacha Opalka, Mark Chlenov, Pablo Chacón, William J. Rice,
Willy Wriggers, and Seth Darst. Structure and Function of the
Transcription Elongation Factor GreB Bound to Bacterial RNA Polymerase.
Cell, 2003, Vol. 114, pp. 335-345. [Abstract]
[Article]
[Cell
Introduction]
Willy
Wriggers, Pablo Chacón, Julio Kovacs, Florence Tama and Stefan
Birmanns. Topology Representing Neural Networks Reconcile
Biomolecular Shape, Structure, and Dynamics. Neurocomputing,
2004, Vol. 56, pp. 365-379. [Abstract]
[Article]
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